Chocolate Chip Baked Oatmeal Cups

You need just 1 bowl and some simple, wholesome ingredients to make these healthy-ish chocolate chip baked oatmeal cups. Theyโ€™re ready in about 30 minutes, keep well in the refrigerator, and make a wonderful on-the-go breakfast, snack, or healthier dessert. The whole family, kids included, love them.

One reader, Bev, commented: โ€œEasy, healthy, and the whole family loves them! They keep well and travel well for school and work lunches. โ˜…โ˜…โ˜…โ˜…โ˜…โ€œ

chocolate chip baked oatmeal cups on gray backdrop with wooden bowl of mini chocolate chips.

Have you ever tried baked oatmeal before? Itโ€™s soft and creamy, yet sturdy enough to eat with a fork. This recipe is similar, but a little more solid so it can be a handheld breakfast on your way out the door. (Orโ€ฆ in realityโ€ฆ clench between your teeth while your hands are busy packing bags and grabbing the keys.)

If youโ€™ve tried my apple cinnamon baked oatmeal cups or these pumpkin baked oatmeal cups, youโ€™re familiar with todayโ€™s recipe and process. Itโ€™s all very simple. Today Iโ€™m adding chocolate chips and almond butter, plus some ground flax for a nutritious punch.


These Chocolate Chip Baked Oatmeal Cups Are:

But most importantly: adult approved because theyโ€™re quickโ€ฆ and have chocolate chips. And kid approved because theyโ€™re deliciousโ€ฆ and have chocolate chips. A harmonious win for us all.

The little bit of sweetness from our chocolate chips makes them one of my favorite healthy dessert recipes and gluten free dessert recipes. A wholesome breakfast/dessert hybrid you can feel good about!

chocolate chip baked oatmeal cup muffins on white parchment paper with one in center broken open.

Are They Oatmeal? Are They Muffins?

Yes and yes. Compared to a bowl of oatmeal, these chocolate chip baked oatmeal cups are solid and sturdy, so they make an excellent portable breakfast or snack.

But you should expect a chewier, coarser texture than, say, blueberry oatmeal muffins. Todayโ€™s recipe does not include flour or a lot of leavener, so the oatmeal cups are not cakey like a regular muffin. If youโ€™re in the mood for a regular muffin, try these healthy bran muffins.


Grab These Ingredients:

ingredients on baking sheet including milk, oats, ground flax, almond butter, applesauce, eggs, maple syrup, and more.

Hereโ€™s why you need each:

  1. Milk: Milk softens the oats and keeps the centers moist. You can use any kind of milk you have on hand, dairy or nondairy. Oat milk is a good choice here!
  2. Eggs: Eggs provide protein as well as structure, binding the ingredients together.
  3. Maple Syrup: Pure maple syrup sweetens and flavors these baked oatmeal cups.
  4. Unsweetened Applesauce: Applesauce takes the place of butter or oil. I love using applesauce to replace all or some oil in certain baked goods, like morning glory muffins.
  5. Almond Butter: For a little flavor. Feel free to use peanut butter instead, or simply leave it out for a nut-free version.
  6. Oats: Unlike applesauce muffins where oats are part of the dry ingredients, here the oats are the entire base of the recipe. Old-fashioned whole rolled oats are the best and also what I recommend for oatmeal raisin cookies. Quick oats work, but the centers of the oatmeal cups arenโ€™t as moist. Steel cut oats require extra prepโ€”see recipe Notes.
  7. Ground Flaxseed: This nutrient-packed superfood is a healthful add-in. You canโ€™t really taste it, but feel free to skip it if you donโ€™t have any.
  8. Baking Powder: Gives a little lift, preventing the oatmeal cups from being overly dense.
  9. Cinnamon, Vanilla Extract, & Salt: The trifecta of muffin flavor enhancers!
  10. Mini Chocolate Chips: You can use regular size, but mini = more in every bite!

If youโ€™re interested in another gluten free muffin option, I always love these blueberry almond muffins.


1 Bowl, No Mixer Recipe

These chocolate chip oatmeal cups require just 1 mixing bowl. No need to break out your mixer, just grab a whisk and a spatula. Whisk all the ingredients (except the chocolate chips) together, and then fold in the chocolate chips. Itโ€™s that easy.

Donโ€™t get nervous if your batter looks like this:

oats in liquid batter with mini chocolate chips in a glass bowl with red silicone spatula.

Itโ€™s supposed to be very liquidy. Spoon into greased muffin cups. The recipe conveniently makes 12 in a standard muffin pan.

liquidy oat mixture in muffin pan before baking.

Bake for about 30 minutes. EASY!

Warm from the oven, the chocolate chips are all melty, and you can pretend youโ€™re eating chocolate chip cookies. Messy hands will ensue.

baked chocolate chip oatmeal cup muffins in muffin pan and two stacked on top of eachother.

I usually prep todayโ€™s oatmeal cups or these breakfast cookies in the beginning of the week, then refrigerate them for quick breakfasts and snacks. You can eat them cold straight from the refrigerator, or reheat them in the microwave for a few seconds. They freeze and thaw beautifully, too!

Try these other flavors next: apple cinnamon baked oatmeal cups and pumpkin baked oatmeal cups. And for even more breakfast inspiration, see my complete list of 30+ healthy breakfast recipes.

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    chocolate chip baked oatmeal cups on gray backdrop with wooden bowl of mini chocolate chips.

    Chocolate Chip Baked Oatmeal Cups (GF)

    5 Stars 4 Stars 3 Stars 2 Stars 1 Star 4.9 from 19 reviews
    • Author: Sally
    • Prep Time: 5 minutes
    • Cook Time: 25 minutes
    • Total Time: 35 minutes
    • Yield: 12 cups
    • Category: Breakfast
    • Method: Baking
    • Cuisine: American
    Save Recipe

    Description

    These healthy-ish chocolate chip baked oatmeal cups come together quickly and easily in just 1 bowl. Theyโ€™re soft and moist inside with chewy tops and plenty of flavor. Make them ahead and enjoy all week long!


    Ingredients

    • 1 and 1/2 cups (360ml) milk (dairy or nondairy)
    • 2 large eggs*
    • 1/2 cup (120ml) pure maple syrup*
    • 1/2 cup (120g) unsweetened applesauce
    • 1/2 cup (125g) creamy or crunchy almond butter*
    • 3 and 1/4 cups (276g) old-fashioned whole rolled oats*
    • 1/3 cup (35g) ground flaxseed*
    • 1 teaspoon baking powder
    • 1 teaspoon ground cinnamon
    • 1 teaspoon pure vanilla extract
    • 1/4 teaspoon salt
    • 3/4 cup (128g) regular size or mini chocolate chips

    Instructions

    1. Preheat oven to 350ยฐF (177ยฐC). Generously spray a 12-count muffin pan with nonstick spray. If using muffin liners, spray them with nonstick spray. The oatmeal cups stick to the liners a bit regardless, so I recommend skipping them.
    2. In a large bowl, whisk all of the ingredients together, except for the chocolate chips. Using a spoon or silicone spatula, fold in the chocolate chips. Batter will be a little liquidy. Spoon batter evenly into muffin cups, making sure both the oats and liquid are in each. Fill all the way to the top.
    3. Bake for 28โ€“30 minutes or until the edges are lightly browned and tops appear set. If the tops are browning very quickly, tent a piece of aluminum foil over the muffin pan.
    4. Cool for 5โ€“10 minutes before serving.
    5. Cover leftover oatmeal cups tightly and refrigerate for up to 1 week.

    Notes

    1. Make Ahead & Freezing Instructions: Bake the oatmeal cups, cool completely, and store in the refrigerator all week for easy breakfasts. Reheat in the microwave for a few seconds, or cover and heat in a 350ยฐF (177ยฐC) oven for 5โ€“6 minutes. To freeze, bake and cool oatmeal cups. Cover tightly and freeze for up to 3 months. Thaw in the refrigerator or at room temperature. Warm to your liking.
    2. Special Tools (affiliate links): 12-count Muffin Pan | Glass Mixing Bowl | Whisk | Silicone Spatula
    3. Donโ€™t: Do not make oatmeal batter ahead of time. The oats will soak up all the liquid! Whisk it all together, then bake right away. 
    4. Eggs: Eggs bind the ingredients. If needed, you can replace the eggs with 1/3 cup unsweetened applesauce or mashed banana. I do find the oatmeal cups fall apart a little when replacing the eggs.
    5. Sugar: I recommend pure maple syrup because the flavor is outstanding and the baked oatmeal cups are extra moist. If you need a substitute, you can use packed brown sugar, coconut sugar, or honey.
    6. Almond Butter: Almond butter adds a little flavor. Feel free to use peanut butter or other nut butter instead, or simply leave it out for a nut-free version. If you leave it out, reduce oats to 3 cups (255g).
    7. Oats: Whole rolled oats give you the best texture. You can use quick oats instead, but they soak up more moisture so the centers wonโ€™t be as moist. If using steel-cut oats, soak the oats in the milk for 30 minutes, then stir in the rest of the ingredients. Add a few extra minutes to the bake time. The oatmeal cups are best with whole oats.
    8. Ground Flaxseed: If you donโ€™t have ground flaxseed, you can leave it out with no other changes to the recipe.

    Nutrition

    • Serving Size: 1 muffin cup
    • Calories: 250
    • Sugar: 10.2 g
    • Sodium: 87.5 mg
    • Fat: 9.3 g
    • Carbohydrates: 31.6 g
    • Fiber: 5.3 g
    • Protein: 7.5 g
    • Cholesterol: 31 mg

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      About the Author

      Sally McKenney

      Sally McKenney is a professional baker, food photographer, and cookbook author. Since 2011, she has been sharing meticulously tested recipes and step-by-step tutorials, helping home bakers gain confidence in the kitchen. Over the years, her dedication to approachable baking has built a loyal community of millions. Her work has been featured on Good Morning America, in People Magazine, and on popular sites like BuzzFeed, HuffPost, The Kitchn, and Country Living.

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      Reader Comments and Reviews

      1. Laura says:
        March 20, 2025

        Iโ€™ve been making these for about a year now โ€“ as soon as Iโ€™ve eaten the last of one batch, I pretty much immediately make the next one! The only changes I make is to use peanut butter (which is suggested anyway), replace 1/4 cup of oats for 1/4 cup oat bran, and I add an extra 1/8 tsp. of salt. Today, Iโ€™m experimenting a bit โ€“ Iโ€™ve added 1/4 cup cocoa powder to make it more brownie-like and 2 tablespoons of butter to make up for the added dry ingredient. Theyโ€™re baking now, but they look fabulous! If this experiment works, I might try an โ€œAlmond Joyโ€ version โ€“ using the almond butter given, my cocoa powder idea, and replacing some of the chocolate chips with shredded coconut and slivered almonds! Doesnโ€™t that sound yummy?!

        Reply
      2. Lisa says:
        February 16, 2025

        Hi Sally! Can the baked oatmeal be made into cups/muffins like this recipe? Thank you!

        Reply
        1. Michelle @ Sally's Baking says:
          February 16, 2025

          Hi Lisa, yes absolutely!

          Reply
      3. Ti Phillips says:
        January 5, 2025

        These are really tasty! I made 24 by cutting the amount in each cup by half, and baked 20 minutes.

        Reply
      4. Beth L. says:
        January 4, 2025

        If I want to use oil instead of applesauce (its what I have on hand), would it be same amount? thank you!

        Reply
        1. Sally @ Sally's Baking says:
          January 5, 2025

          Hi Beth, I would not substitute oil for the applesauce. 1/2 cup of oil would be way too much for this batter/mixture. For best results, stick with applesauce or you can try mashed banana in its place.

          Reply
      5. Emma A says:
        January 4, 2025

        Hello! Just made these and they are SO good! Could you add protein powder? And any ways to reduce sugar? Thanks!!

        Reply
        1. Erin @ Sally's Baking says:
          January 4, 2025

          Hi Emma, we havenโ€™t experimented with adding protein powder to this recipe. Sugar is used for moisture and texture in baked goods as well as taste. You can certainly try reducing the sugar, but the resulting texture will be different than intended. Weโ€™d love to know if you give anything a try!

          Reply
        2. Victoria says:
          January 5, 2025

          I accidentally forgot the maple syrup (and the salt!) while making these today. Hazards of baking with a toddler I guess. They actually turned out pretty good! I was concerned when they were in the oven and I realized I forgot the sugar and saw this comment. They taste more like a baked oatmeal cup than a muffin but still very tasty with the mini chocolate chips. My 4 year old wasnโ€™t impressed but the toddler enjoyed! Iโ€™ll try with the maple syrup next time for the 4 year old.

          Reply
      6. Ina Douglas says:
        January 3, 2025

        I like that you show nutrition data in your recipes. Could you please include potassium and phosphates in the nutrition chart? There are medical conditions that need this information. Kidney disease especially is very common and benefits from foods made from scratch. As we age everyonesโ€™ kidneys deteriorate. Thank you

        Reply
        1. Stephanie @ Sally's Baking says:
          January 3, 2025

          Hi Ina, we donโ€™t usually include detailed nutrition information as it can vary between different brands of the same ingredients. Plus, many recipes have ingredient substitutions or optional ingredients listed. However, there are many handy online calculators where you can plug in and customize your exact ingredients/brands. Readers have found this one especially helpful: https://www.verywellfit.com/recipe-nutrition-analyzer-4157076

          Reply
      7. CCJosellis says:
        January 3, 2025

        Can I substitute regular or golden raisins for the chocolate chips?

        Reply
        1. Sally @ Sally's Baking says:
          January 3, 2025

          Yes, absolutely. Same amount.

          Reply
      8. Melissa Daniels says:
        November 21, 2024

        My family loves these so much. I make a batch and they eat them for breakfast and take them in their lunch for school. I even had their teachers ask for the recipe! They are a staple in our house. Thank you Sally!

        Reply
      9. Heather Caleb says:
        November 5, 2024

        Followed recipe and had a great outcome (which is the norm with Sallyโ€™s recipes)! I did add 1tsp of chai spice in addition to the cinnamon to give a little more fall flavor. I baked in silicone muffin molds, and ended up with 12 full size muffins and 14 mini muffins! I will be adding this to the regular rotation for baked good here. Canโ€™t beat how easy these are to make and good source of healthy fats, fiber and protein for a quick on the go snack option.

        Reply
      10. Susan says:
        October 17, 2024

        This will become one of my go-to recipes!! Thank you!!

        Reply
      11. Amy says:
        August 22, 2024

        I was wondering if I could substitute honey for maple syrup? Would it be the same amount?

        Reply
        1. Lexi @ Sally's Baking says:
          August 22, 2024

          Hi Amy, yesโ€”same amount.

          Reply
      12. Jenna says:
        July 13, 2024

        Hi! I loved these, but why is it necessary that they are refrigerated?

        Reply
        1. Sally @ Sally's Baking says:
          July 15, 2024

          Hi Jenna! Theyโ€™re quite moist and I find that they can go bad quickly. Theyโ€™re usually fine for a day or 2 at room temperature, but after that I recommend refrigerating.

          Reply
      13. Idelle says:
        April 14, 2024

        Instead of using muffin tins, can it be baked in a 9ร—9 (or 9ร—13) pan. (Similar to 1 Bowl Baked Oatmeal)?

        Reply
        1. Trina @ Sally's Baking says:
          April 15, 2024

          Hi Idelle! We would add chocolate chips to our baked oatmeal recipe instead ๐Ÿ™‚

          Reply
      14. Cheryl says:
        April 14, 2024

        Just finished baking and smells so yummy. I didnโ€™t have applesauce, so substituted 1 mashed banana, made exactly as written. These are really really delish!! Will be making these again. Thank you for the amazing recipe

        Reply
      15. Laura says:
        April 7, 2024

        What would happen if I blitz the oats down a bit โ€“ not as much as flour but about halfway?

        Reply
        1. Lexi @ Sally's Baking says:
          April 8, 2024

          Hi Laura, that will work, but the centers of the oatmeal cups may not be quite as moist.

          Reply
      16. JC says:
        March 3, 2024

        I just took them out of the oven and they seem delicious! (the batter was really tastyโ€ฆ) realized as they were cooking that i completely forgot the nut butterโ€ฆ But kept the same amount oats. Seems to have turned out ok, i wonder if they would a bit less soft with the butter?

        Reply